Stemformatics: visualize and download curated stem cell data

Stemformatics includes curated ‘collections’ of data relevant to cell reprogramming, as well as hematopoiesis and leukaemia. Rather than simply rehosting datasets as they appear in public repositories, Stemformatics uses a stringent set of quality control metrics and its own pipelines to process handpicked datasets from raw files.

Percentage of datasets passing quality control for journal of publication (not all journals are shown). Numbers on each bar indicate the number of passed/total datasets and colours indicate the impact factor range of the journal.

Online version

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Plain text citation:

Jarny Choi, Chris M Pacheco, Rowland Mosbergen, Othmar Korn, Tyrone Chen, Isha Nagpal, Steve Englart, Paul W Angel, Christine A Wells, "Stemformatics: visualize and download curated stem cell data." Nucleic Acids Research, Volume 47, Issue D1, 08 January 2019, Pages D841–D846. DOI: https://doi.org/10.1093/nar/gky1064

Bibtex citation:

@article{10.1093/nar/gky1064,
    author = {Choi, Jarny and Pacheco, Chris M and Mosbergen, Rowland and Korn, Othmar and Chen, Tyrone and Nagpal, Isha and Englart, Steve and Angel, Paul W and Wells, Christine A},
    title = "{Stemformatics: visualize and download curated stem cell data}",
    journal = {Nucleic Acids Research},
    volume = {47},
    number = {D1},
    pages = {D841-D846},
    year = {2018},
    month = {11},
    issn = {0305-1048},
    doi = {10.1093/nar/gky1064},
    url = {https://doi.org/10.1093/nar/gky1064},
    eprint = {https://academic.oup.com/nar/article-pdf/47/D1/D841/27437452/gky1064.pdf},
}